Publications

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Peer-Reviewed Journal Articles

Irmai J., Zhao S., Schöne M., Presberger J. and Andres B. A Graph Multi-separator Problem for Image Segmentation. Journal of Mathematical Imaging and Vision 66(5):839-872, 2024 
@misc{irmai-2023-separator,
    author = {Jannik Irmai 
        and Shengxian Zhao 
        ans Mark Sch\"one
        and Jannik Presberger 
        and Bjoern Andres},
    title = {A Graph Multi-separator Problem for Image Segmentation},
    journal = {Journal of Mathematical Imaging and Vision},
    volume = {66},
    number = {5},
    pages = {839--872},
    year = {2024},
    doi = {10.1007/s10851-024-01201-1},
}
🗎 01
Andres B., Di Gregorio S., Irmai J. and Lange J.-H. A Polyhedral Study of Lifted Multicuts. Discrete Optimization 47:100757, 2023 
@article{andres-2023-a-polyhedral,
    author = {Bjoern Andres 
        and Silvia {Di Gregorio} 
        and Jannik Irmai 
        and Jan-Hendrik Lange},
    title = {A polyhedral study of lifted multicuts},
    journal = {Discrete Optimization},
    volume = {47},
    pages = {100757},
    year = {2023},
    doi = {10.1016/j.disopt.2022.100757},
}
🗎
Levinkov E., Kardoost A., Andres B. and Keuper M. Higher-Order Multicuts for Geometric Model Fitting and Motion Segmentation. Transactions on Pattern Analysis and Machine Intelligence 45(1):608-622, 2023 
@article{levinkov-2022,
    author = {Levinkov, Evgeny 
        and Kardoost, Amirhossein 
        and Andres, Bjoern 
        and Keuper, Margret},
    journal = {Transactions on Pattern Analysis and Machine Intelligence}, 
    title = {Higher-Order Multicuts for Geometric Model Fitting and Motion 
        Segmentation}, 
    year = {2023},
    volume = {45},
    number = {1},
    pages = {608--622},
    doi = {10.1109/TPAMI.2022.3148795},
}
🗎
Keuper M., Tang S., Andres B., Brox T. and Schiele B. Motion Segmentation & Multiple Object Tracking by Correlation Co-Clustering. Transactions on Pattern Analysis and Machine Intelligence, 42(1):140-153, 2020 
@article{keuper-2020,
    author = {Margret Keuper 
        and Siyu Tang 
        and Bjoern Andres 
        and Thomas Brox 
        and Bernt Schiele},
    title = {Motion Segmentation and Multiple Object Tracking by Correlation 
        Co-Clustering},
    journal = {Transactions on Pattern Analysis and Machine Intelligence},
    volume = {42},
    number = {1},
    pages = {140--153},
    year = {2020},
    doi = {10.1109/TPAMI.2018.2876253},
}
Rempfler M., Stierle V., Ditzel K., Kumar S., Paulitschke P., Andres B., Menze B. H. Tracing Cell Lineages in Videos of Lens-free Microscopy. Medical Image Analysis, 48:147-161, 2018 
@article{rempfler-2018,
    author = {Markus Rempfler 
        and Valentin Stierle 
        and Konstantin Ditzel 
        and Sanjeev Kumar 
        and Philipp Paulitschke 
        and Bjoern Andres 
        and Bjoern H. Menze},
    title = {Tracing Cell Lineages in Videos of Lens-free Microscopy},
    journal = {Medical Image Analysis},
    year = {2018},
    volume = {48},
    pages = {147--161},
    doi = {10.1016/j.media.2018.05.009},
}
Türetken E., Benmansour F., Andres B., Głowacki P., Pfister H. and Fua P. Reconstructing Curvilinear Networks using Path Classifiers and Integer Programming. Transactions on Pattern Analysis and Machine Intelligence, 38(12):2515-2530, 2016 
@article{turetken-2016,
    author = {Engin T\"uretken 
        and Fethallah Benmansour 
        and Bjoern Andres 
        and Przemyslaw G\l{}owacki
        and Hanspeter Pfister
        and Pascal Fua},
    title = {Reconstructing Curvilinear Networks using Path Classifiers and 
        Integer Programming}, 
    journal = {Transactions on Pattern Analysis and Machine Intelligence},
    year = {2016},
    volume = {38},
    number = {12},
    pages = {2515--2530},
    doi = {10.1109/TPAMI.2016.2519025},
}
🗎
Kappes J. H., Andres B., Hamprecht F. A., Schnörr C., Nowozin S., Batra D., Kim S., Kausler B. X., Kröger T., Lellmann J., Komodakis N., Savchynskyy B. and Rother C. A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision, 115(2):155-184, 2015 
@article{kappes-2015,
    author = {Kappes, J{\"o}rg H.
        and Andres, Bjoern
        and Hamprecht, Fred A.
        and Schn{\"o}rr, Christoph
        and Nowozin, Sebastian
        and Batra, Dhruv
        and Kim, Sungwoong
        and Kausler, Bernhard X.
        and Kr{\"o}ger, Thorben
        and Lellmann, Jan
        and Komodakis, Nikos
        and Savchynskyy, Bogdan
        and Rother, Carsten},
    title = {A Comparative Study of Modern Inference Techniques for Structured 
        Discrete Energy Minimization Problems},
    journal = {International Journal of Computer Vision},
    year = {2015},
    volume = {115},
    number = {2},
    pages = {155--184},
    doi = {10.1007/s11263-015-0809-x},
}
🗎 01
Rempfler M., Schneider M., Ielacqua G., Xiao X., Stock S. R., Klohs J., Székely G., Andres B., Menze B. H. Reconstructing Cerebrovascular Networks under Local Physiological Constraints by Integer Programming. Medical Image Analysis, 25(1):86-94, 2015
Medical Image Analysis Best Paper Award 2015 by the MICCAI Society 
@article{rempfler-2015,
    author = {Markus Rempfler 
        and Matthias Schneider 
        and Giovanna D. Ielacqua 
        and Xianghui Xiao 
        and Stuart R. Stock 
        and Jan Klohs
        and G\'bor Sz\'ekely 
        and Bjoern Andres 
        and Bjoern H. Menze},
    title = {Reconstructing cerebrovascular networks under local physiological 
        constraints by integer programming},
    journal = {Medical Image Analysis},
    volume = {25},
    number = {1},
    pages = {86--94},
    year = {2015},
    doi = {10.1016/j.media.2015.03.008},
}
Andres B., Köthe U., Kröger T., Helmstaedter M., Briggman K. L., Denk W. and Hamprecht F. A. 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis, 16(4):796-805, 2012 
@article{andres-2012-3d,
    author = {Bjoern Andres 
        and Ullrich K\"othe 
        and Thorben Kr\"oger 
        and Moritz Helmstaedter 
        and Kevin L. Briggman 
        and Winfried Denk 
        and Fred A. Hamprecht},
    title = {{3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model 
        over Supervoxel Boundaries}},
    journal = {Medical Image Analysis},
    volume = {16},
    number = {4},
    pages = {796--805},
    year = {2012},
    doi = {10.1016/j.media.2011.11.004},
}
🗎

Peer-Reviewed Conference Articles

Naumann L. F., Irmai J., Zhao S. and Andres B. Box Facets and Cut Facets of Lifted Multicut Polytopes. ICML 2024 
@inproceedings{naumann-2024-cut,
    author = {Lucas Fabian Naumann 
        and Jannik Irmai 
        and Shengxian Zhao 
        and Bjoern Andres},
    title = {Box Facets and Cut Facets of Lifted Multicut Polytopes},
    booktitle = {ICML},
    year = {2024},
    url = {https://proceedings.mlr.press/v235/naumann24a.html},
}
🗎
Stein D. and Andres B. Partial Optimality in the Linear Ordering Problem. ICML 2024 
@Inproceedings{stein-2024-partial,
    author = {David Stein and Bjoern Andres},
    title = {Partial Optimality in the Linear Ordering Problem},
    booktitle = {ICML},
    year = {2024},
    url = {https://proceedings.mlr.press/v235/stein24a.html},
}
🗎 01
Heidrich H., Irmai J. and Andres B. A 4-Approximation Algorithm for Min Max Correlation Clustering. AISTATS 2024 
@inproceedings{heidrich-2024,
    author = {Heidrich, Holger and Irmai, Jannik and Andres, Bjoern},
    title = {A 4-Approximation Algorithm for Min Max Correlation Clustering},
    booktitle = {AISTATS},
    year = {2024},
    url = {https://proceedings.mlr.press/v238/heidrich24a.html},
}
🗎 01
Presberger J., Keshara R., Stein D., Kim Y. H., Grapin-Botton A. and Andres B. Correlation Clustering of Organoid Images. GCPR 2024 (accepted) 
@misc{presberger-2024-organoids,
    author = {Jannik Presberger
        and Rashmiparvathi Keshara
        and David Stein
        and Yung Hae Kim
        and Anne Grapin-Botton
        and Bjoern Andres},
    title = {Correlation Clustering of Organoid Images},
    year = {2024},
    eprint = {2403.13376},
    archivePrefix = {arXiv},
    url = {https://arxiv.org/abs/2403.13376},
}
🗎
Irmai J. and Andres B. A State-of-the-Art Cutting Plane Algorithm for Clique Partitioning. GCPR 2024 (accepted)
Stein D., Di Gregorio S. and Andres B. Partial Optimality in Cubic Correlation Clustering. ICML 2023 
@inproceedings{stein-2023-partial,
    author = {David Stein and Silvia Di Gregorio and Bjoern Andres},
    title = {Partial Optimality in Cubic Correlation Clustering},
    booktitle = {ICML},
    year = {2023},
}
🗎 01
Stein D. and Andres B. Correlation Clustering of Bird Sounds. GCPR 2023 
@inproceedings{stein-2023-correlation,
    author = {David Stein and Bjoern Andres},
    title = {Correlation Clustering of Bird Sounds},
    booktitle = {German Conference on Pattern Recognition (GCPR)},
    year = {2023},
    doi = {10.1007/978-3-031-54605-1_33},
}
🗎 01
Lange J.-H. and Andres B. On the Lifted Multicut Polytope for Trees. GCPR 2020 
@inproceedings{lange-2020,
    author = {Jan-Hendrik Lange and Bjoern Andres},
    title = {On the Lifted Multicut Polytope for Trees},
    booktitle = {German Conference on Pattern Recognition (GCPR)},
    year = {2020},
    doi = {10.1007/978-3-030-71278-5_26},
}
Song J., Andres B., Black M. J., Hilliges O. and Tang S. End-to-end Learning for Graph Decomposition. ICCV 2019 
@inproceedings{song-2019,
    author = {Jie Song 
        and Bjoern Andres 
        and Michael J. Black 
        and Otmar Hilliges 
        and Siyu Tang},
    title = {End-to-end Learning for Graph Decomposition},
    year = {2019},
    booktitle = {ICCV},
    doi = {10.1109/ICCV.2019.01019},
}
🗎
Lange J.-H., Andres B. and Swoboda P. Combinatorial persistency criteria for multicut and max-cut. CVPR 2019 
@inproceedings{lange-2018-persistency,
    author = {Jan-Hendrik Lange and Bjoern Andres and Paul Swoboda},
    title = {Combinatorial persistency criteria for multicut and max-cut},
    booktitle = {CVPR},
    year = {2019},
    doi = {10.1109/CVPR.2019.00625},
}
🗎
Lange J.-H., Karrenbauer A. and Andres B. Partial Optimality and Fast Lower Bounds for Weighted Correlation Clustering. ICML 2018 
@inproceedings{lange-2018,
    author = {Jan-Hendrik Lange and Andreas Karrenbauer and Bjoern Andres},
    title = {Partial Optimality and Fast Lower Bounds for Weighted Correlation 
        Clustering},
    booktitle = {ICML},
    year = {2018},
    url = {https://proceedings.mlr.press/v80/lange18a.html},
}
🗎 🗎
Laude E., Lange J.-H., Schüpfer J., Domokos C., Leal-Taixé L., Schmidt F., Andres B. and Cremers D. Discrete-Continuous ADMM for Transductive Inference in Higher-Order MRFs. CVPR 2018 
@inproceedings{laude-2018,
    author = {Emanuel Laud
        and Jan-Hendrik Lange
        and Jonas Sch\"upfer
        and Csaba Domokos
        and Laura Leal-Taix\'e
        and Frank R. Schmidt
        and Bjoern Andres
        and Daniel Cremers
    },
    title = {Discrete-Continuous {ADMM} for Transductive Inference in 
        Higher-Order {MRFs}},
    booktitle = {CVPR},
    year = {2018},
    doi = {10.1109/CVPR.2018.00174},
}
🗎
Rempfler M.*, Lange J.-H.*, Jug F., Blasse C., Myers E. W., Menze B. H. and Andres B. Efficient Algorithms for Moral Lineage Tracing. ICCV 2017 
@inproceedings{rempfler-2017-arxiv,
    author = {Markus Rempfler 
        and Jan-Hendrik Lange
        and Florian Jug
        and Corinna Blasse
        and Eugene W. Myers
        and Bjoern H. Menze
        and Bjoern Andres},
    title = {Efficient Algorithms for Moral Lineage Tracing},
    booktitle = {ICCV},
    year = {2017},
    doi = {10.1109/ICCV.2017.503},
}
🗎
Rempfler M., Kumar S., Stierle V., Paulitschke P., Andres B. and Menze B. Cell Lineage Tracing in Lens-free Microscopy Videos. MICCAI 2017 
@inproceedings{rempfler-2017,
  author    = {Markus Rempfler
    and Sanjeev Kumar
    and Valentin Stierle
    and Philipp Paulitschke
    and Bjoern Andres
    and Bjoern H. Menze},
  title     = {Cell Lineage Tracing in Lens-free Microscopy Videos},
  booktitle = {MICCAI},
  year      = {2017},
}
🗎
Levinkov E. and Kirillov A. and Andres B. A Comparative Study of Local Search Algorithms for Correlation Clustering GCPR 2017 
@inproceedings{levinkov-2017-a,
    author = {Evgeny Levinkov and Alexander Kirillov and Bjoern Andres},
    title = {A Comparative Study of Local Search Algorithms for Correlation 
        Clustering},
    booktitle = {GCPR},
    year = {2017},
    doi = {10.1007/978-3-319-66709-6_9},
}
Horňáková A., Lange J.-H. and Andres B. Analysis and Optimization of Graph Decompositions by Lifted Multicuts. ICML 2017 
@inproceedings{hornakova-2017,
    author = {Andrea Hor\v{n}\'akov\'a and Jan-Hendrik Lange and Bjoern Andres},
    title = {Analysis and Optimization of Graph Decompositions by Lifted 
        Multicuts},
    booktitle = {ICML},
    year = {2017},
    url = {https://dl.acm.org/doi/10.5555/3305381.3305540},
}
🗎 🗎
Swoboda P. and Andres B. A Message Passing Algorithm for the Minimum Cost Multicut Problem. CVPR 2017 
@inproceedings{swoboda-2017,
    author = {Paul Swoboda and Bjoern Andres},
    title = {A Message Passing Algorithm for the Minimum Cost Multicut Problem},
    booktitle = {CVPR},
    year = {2017},
    doi = {10.1109/CVPR.2017.530},
}
🗎 🗎
Levinkov E., Uhrig J., Tang S., Omran M., Insafutdinov E., Kirillov A., Rother C., Brox T., Schiele B. and Andres B. Joint Graph Decomposition and Node Labeling: Problem, Algorithms, Applications. CVPR 2017 
@inproceedings{levinkov-2017,
    author = {Evgeny Levinkov
        and Jonas Uhrig
        and Siyu Tang
        and Mohamed Omran
        and Eldar Insafutdinov
        and Alexander Kirillov
        and Carsten Rother
        and Thomas Brox
        and Bernt Schiele
        and Bjoern Andres},
    title = {Joint Graph Decomposition and Node Labeling: Problem, Algorithms, 
        Applications},
    booktitle = {CVPR},
    year = {2017},
    doi = {10.1109/CVPR.2017.206},
}
🗎 🗎
Kirillov A., Levinkov E., Andres B., Savchynskyy B. and Rother C. InstanceCut: from Edges to Instances with Multicut. CVPR 2017 
@inproceedings{kirillov-2017,
    author = {Alexander Kirillov 
        and Evgeny Levinkov 
        and Bjoern Andres 
        and Bogdan Savchynskyy 
        and Carsten Rother},
    title = {{InstanceCut}: from Edges to Instances with Multicut},
    booktitle = {CVPR},
    year = {2017},
    doi = {10.1109/CVPR.2017.774},
}
🗎 🗎
Insafutdinov E., Andriluka M., Pishchulin L., Tang S., Levinkov E., Andres B. and Schiele B. ArtTrack: Articulated Multi-person Tracking in the Wild. CVPR 2017 (oral presentation) 
@inproceedings{insafutdinov-2017,
    author = {Eldar Insafutdinov 
        and Mykhaylo Andriluka 
        and Leonid Pishchulin 
        and Siyu Tang 
        and Evgeny Levinkov 
        and Bjoern Andres 
        and Bernt Schiele},
    title = {{ArtTrack}: Articulated Multi-person Tracking in the Wild},
    booktitle = {CVPR},
    year = {2017},
    doi = {10.1109/CVPR.2017.142},
}
🗎 🗎
Tang S., Andriluka M., Andres B. and Schiele B. Multiple People Tracking by Lifted Multicut and Person Re-Identification. CVPR 2017 
@inproceedings{tang-2017-multiple,
    author = {Siyu Tang and Mykhaylo Andriluka and Bjoern Andres and Bernt Schiele},
    title = {Multiple People Tracking by Lifted Multicut and Person Re-Identification},
    booktitle = {CVPR},
    year = {2017},
    doi = {10.1109/CVPR.2017.394},
}
🗎
Beier T., Andres B., Köthe U. and Hamprecht F. A. An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem. ECCV 2016 (oral presentation) 
@inproceedings{beier-2016,
    author = {Thorsten Beier 
        and Bjoern Andres 
        and Ullrich K\"othe 
        and Fred A. Hamprecht},
    title = {An Efficient Fusion Move Algorithm for the Minimum Cost Lifted 
        Multicut Problem},
    booktitle = {ECCV},
    year = {2016},
    doi = {10.1007/978-3-319-46475-6_44},
}
Insafutdinov E., Pishchulin L., Andres B., Andriluka M. and Schiele B. DeeperCut: A Deeper, Stronger, and Faster Multi-Person Pose Estimation Model. ECCV 2016 
@inproceedings{insafutdinov-2016,
    author = {Eldar Insafutdinov 
        and Leonid Pishchulin 
        and Bjoern Andres 
        and Mykhaylo Andriluka 
        and Bernt Schiele},
    title = {DeeperCut: A Deeper, Stronger, and Faster Multi-Person Pose 
        Estimation Model},
    booktitle = {ECCV},
    year = {2016},
    doi = {10.1007/978-3-319-46466-4_3},
}
🗎
Levinkov E., Tompkin J., Bonneel N., Kirchhoff S., Andres B. and Pfister H. Interactive Multicut Video Segmentation. Pacific Graphics 2016 
@inproceedings{levinkov-2016,
    booktitle = {Pacific Graphics Short Papers},
    editor = {Eitan Grinspun and Bernd Bickel and Yoshinori Dobashi},
    title = {Interactive Multicut Video Segmentation},
    author = {Levinkov, Evgeny 
        and Tompkin, James 
        and Bonneel, Nicolas 
        and Kirchhoff, Steffen 
        and Andres, Bjoern 
        and Pfister, Hanspeter},
    year = {2016},
    publisher = {The Eurographics Association},
    isbn = {978-3-03868-024-6},
    doi = {10.2312/pg.20161332}
}
Rempfler M., Andres B. and Menze B. The Minimum Cost Connected Subgraph Problem in Medical Image Analysis. MICCAI 2016 
@inproceedings{rempfler-2016,
    author = {Markus Rempfler and Bjoern Andres and Bjoern Menze},
    title = {The Minimum Cost Connected Subgraph Problem in Medical Image 
        Analysis},
    booktitle = {MICCAI},
    year = {2016},
    doi = {10.1007/978-3-319-46726-9_46},
}
🗎
Shcherbatyi I. and Andres B. Convexification of Learning from Constraints. GCPR 2016 
@inproceedings{shcherbatyi-2016,
    author    = {Iaroslav Shcherbatyi and Bjoern Andres},
    title     = {Convexification of Learning from Constraints},
    booktitle = {GCPR},
    year      = {2016},
    doi       = {10.1007/978-3-319-45886-1_7},
}
🗎
Jug F.*, Levinkov E.*, Blasse C., Myers E. W. and Andres B. Moral Lineage Tracing. CVPR 2016 
@inproceedings{jug-2016,
    author = {Florian Jug
        and Evgeny Levinkov
        and Corinna Blasse
        and Eugene W. Myers
        and Bjoern Andres},
    title = {Moral Lineage Tracing},
    year = {2016},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2016.638},
}
🗎 01
Pishchulin L., Insafutdinov E., Tang S., Andres B., Andriluka M., Gehler P. and Schiele B. DeepCut: Joint Subset Partition and Labeling for Multi Person Pose Estimation. CVPR 2016 
@inproceedings{pishchulin-2016,
    author = {Leonid Pishchulin
        and Eldar Insafutdinov
        and Siyu Tang
        and Bjoern Andres
        and Miykhaylo Andriluka 
        and Peter Gehler
        and Bernt Schiele},
    title = {{DeepCut}: Joint Subset Partition and Labeling for Multi Person 
        Pose Estimation},
    year = {2016},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2016.533},
}
🗎
Royer L. A., Richmond D. L., Rother C., Andres B. and Kainmueller D. Convexity Shape Constraints for Image Segmentation. CVPR 2016 
@inproceedings{royer-2016,
    author = {Loic A. Royer 
        and David L. Richmond
        and Carsten Rother
        and Bjoern Andres
        and Dagmar Kainmueller},
    title = {Convexity Shape Constraints for Image Segmentation},
    year = {2016},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2016.50},   
}
🗎
Keuper M., Levinkov E., Bonneel N., Lavoué G., Brox T. and Andres B. Efficient Decomposition of Image and Mesh Graphs by Lifted Multicuts. ICCV 2015 
@inproceedings{keuper-2015a,
    author = {Margret Keuper 
        and Evgeny Levinkov 
        and Nicolas Bonneel 
        and Guillaume Lavou\'{e} 
        and Thomas Brox 
        and Bjoern Andres},
    title = {Efficient Decomposition of Image and Mesh Graphs by Lifted 
        Multicuts},
    year = {2015},
    booktitle = {ICCV},
    doi = {10.1109/ICCV.2015.204},
}
🗎 01
Keuper M., Andres B. and Brox T. Motion Trajectory Segmentation via Minimum Cost Multicuts. ICCV 2015 
@inproceedings{keuper-2015b,
    author = {Margret Keuper 
        and Bjoern Andres 
        and Thomas Brox},
    title = {Motion Trajectory Segmentation via Minimum Cost Multicuts},
    year = {2015},
    booktitle = {ICCV},
    doi = {10.1109/ICCV.2015.374},
}
🗎 01
Tang S., Andres B., Andriluka M. and Schiele B. Subgraph Decomposition for Multi-Target Tracking. CVPR 2015 
@inproceedings{tang-2015,
    author = {Siyu Tang 
        and Bjoern Andres 
        and Miykhaylo Andriluka 
        and Bernt Schiele},
    title = {Subgraph Decomposition for Multi-Target Tracking},
    year = {2015},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2015.7299138},
}
🗎
Rempfler M., Schneider M., Ielacqua G., Xiao X., Stock S. R., Klohs J., Székely G., Andres B., Menze B. H. Extracting Vascular Networks under Physiological Constraints via Integer Programming. MICCAI 2014 (oral presentation)
Student Best Paper Award, Runner-Up (to Markus Rempfler) 
@incollection{rempfler-2014,
    author = {Rempfler, Markus 
        and Schneider, Matthias 
        and Ielacqua, Giovanna D. 
        and Xiao, Xianghui 
        and Stock, Stuart R. 
        and Klohs, Jan 
        and Sz\'ekely, G\'abor 
        and Andres, Bjoern 
        and Menze, Bjoern H.},
    title = {Extracting Vascular Networks under Physiological Constraints via 
        Integer Programming},
    year = {2014},
    booktitle = {MICCAI},
    doi = {10.1007/978-3-319-10470-6_63},
}
Funke J., Martel J. N. P., Gerhard S., Andres B., Ciresan D. C., Giusti A., Gambardella L. M., Schmidhuber J., Pfister H., Cardona A. and Cook M. Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. MICCAI 2014 (oral presentation) 
@incollection{funke-2014,
    author = {Funke, Jan 
        and Martel, Julien N. P. 
        and Gerhard, Stephan 
        and Andres, Bjoern 
        and Ciresan, Dan C. 
        and Giusti, Alessandro 
        and Gambardella, Luca M. 
        and Schmidhuber, J\"{u}rgen 
        and Pfister, Hanspeter 
        and Cardona, Albert 
        and Cook, Matthew},
    year = {2014},
    booktitle = {MICCAI},
    title = {Candidate Sampling for Neuron Reconstruction from Anisotropic 
        Electron Microscopy Volumes},
    doi = {10.1007/978-3-319-10404-1_3},
}
Andres B.*, Yarkony J.*, Manjunath B. S., Kirchhoff S., Türetken E., Fowlkes C. C. and Pfister H. Segmenting Planar Superpixel Adjacency Graphs w.r.t. Non-planar Superpixel Affinity Graphs. EMMCVPR 2013 (oral presentation) 
@inproceedings{andres-2013,
    author = {Bjoern Andres 
        and Julian Yarkony 
        and B. S. Manjunath 
        and Steffen Kirchhoff 
        and Engin T\"uretken 
        and Charless C. Fowlkes 
        and Hanspeter Pfister},
    title = {Segmenting Planar Superpixel Adjacency Graphs w.r.t.~Non-planar 
        Superpixel Affinity Graphs},
    year = {2013},
    booktitle = {EMMCVPR},
    doi = {10.1007/978-3-642-40395-8_20},
}
🗎 🗎
Kappes J., Andres B., Schnörr C., Hamprecht F., Nowozin S., Batra D., Lellman J., Komodakis N., Kim S., Kausler B. and Rother C. A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems. CVPR 2013 (oral presentation) 
@inproceedings{kappes-2013,
    author = {Kappes, J{\"o}rg H. 
        and Andres, Bjoern 
        and Hamprecht, Fred A. 
        and Schn{\"o}rr, Christoph 
        and Nowozin, Sebastian 
        and Batra, Dhruv 
        and Kim, Sungwoong 
        and Kausler, Bernhard X. 
        and Lellmann, Jan 
        and Komodakis, Nikos 
        and Rother, Carsten},
    title = {A Comparative Study of Modern Inference Techniques for Discrete 
        Energy Minimization Problem},
    booktitle = {CVPR},
    year = {2013},
    doi = {10.1109/CVPR.2013.175},
}
🗎 01
Türetken E., Benmansour F., Andres B., Pfister H. and Fua P. Reconstructing Loopy Curvilinear Structures Using Integer Programming. CVPR 2013 (oral presentation) 
@inproceedings{turetken-2013,
    author = {Engin Turetken 
        and Fethallah Benmansour 
        and Bjoern Andres 
        and Hanspeter Pfister 
        and Pascal Fua},
    title = {Reconstructing Loopy Curvilinear Structures Using Integer 
        Programming},
    booktitle = {CVPR},
    year = {2013},
    doi = {10.1109/CVPR.2013.238},
}
Andres B.*, Kröger T.*, Briggman K. L., Denk W., Korogod N., Knott G., Köthe U. and Hamprecht F. A. Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012 
@inproceedings{andres-2012-globally,
    author = {Bjoern Andres 
        and Thorben Kr\"oger 
        and Kevin L. Briggman 
        and Winfried Denk 
        and Natalya Korogod 
        and Graham Knott 
        and Ullrich K\"othe 
        and Fred A. Hamprecht},
    title = {Globally Optimal Closed-surface Segmentation for Connectomics},
    year = {2012},
    booktitle = {ECCV},
    doi = {10.1007/978-3-642-33712-3_56},
}
🗎 01
Andres B., Kappes J. H., Beier T., Köthe U. and Hamprecht F. A. The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. ECCV 2012 
@inproceedings{andres-2012-lazyflipper,
    author = {Bjoern Andres 
        and J\"org H. Kappes 
        and Thorsten Beier 
        and Ullrich K\"othe 
        and Fred A. Hamprecht},
    title = {{The Lazy Flipper}: Efficient Depth-limited Exhaustive Search in 
        Discrete Graphical Models},
    year = {2012},
    booktitle = {ECCV},
    doi = {10.1007/978-3-642-33786-4_12},
}
🗎 01
Kausler B., Schiegg M., Andres B., Lindner M., Leitte H., Hufnagel L., Köthe U. and Hamprecht F. A. A Discrete Chain Graph Model for 3D+t Cell Tracking with High Misdetection Robustness. ECCV 2012 
@inproceedings{kausler-2012,
    author = {Bernhard X. Kausler 
        and Martin Schiegg 
        and Bjoern Andres 
        and Martin Lindner 
        and Ullrich K\"othe 
        and Heike Leitte 
        and Jochen Wittbrodt 
        and Lars Hufnagel 
        and Fred A. Hamprecht},
    title = {A Discrete Chain Graph Model for {3D}+t Cell Tracking with High 
        Misdetection Robustness},
    year = {2012},
    booktitle = {ECCV},
    doi = {10.1007/978-3-642-33712-3_11},
}
Funke J., Andres B., Hamprecht F. A., Cardona A. and Cook M. Efficient Automatic 3D Reconstruction of Branching Neurons from EM Data. CVPR 2012 
@inproceedings{funke-2012,
    author = {Jan Funke 
        and Bjoern Andres 
        and Fred A. Hamprecht 
        and Albert Cardona 
        and Matthew Cook},
    title = {Efficient Automatic {3D}-Reconstruction of Branching Neurons from 
        {EM} Data},
    year = {2012},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2012.6247777},
}
Andres B., Kappes J. H., Beier T., Köthe U. and Hamprecht F. A. Probabilistic Image Segmentation with Closedness Constraints. ICCV 2011 
@inproceedings{andres-2011,
    author = {Bjoern Andres 
        and J\"org H. Kappes 
        and Thorsten Beier 
        and Ullrich K\"othe 
        and Fred A. Hamprecht},
    title = {Probabilistic Image Segmentation with Closedness Constraints},
    year = {2011},
    booktitle = {ICCV},
    doi = {10.1109/ICCV.2011.6126550},
}
🗎 01
Kappes J. H., Speth M., Andres B., Reinelt G. and Schnörr C. Globally Optimal Image Partitioning by Multicuts. EMMCVPR 2011 
@inproceedings{kappes-2011,
    author = {J\"org Hendrik Kappes 
        and Markus Speth 
        and Bjoern Andres 
        and Gerhard Reinelt 
        and Christoph Schn\"orr},
    title = {Globally Optimal Image Partitioning by Multicuts},
    year = {2011},
    booktitle = {EMMCVPR},
    doi = {10.1007/978-3-642-23094-3_3},
}
🗎
Andres B., Kappes J. H., Köthe U., Schnörr C. and Hamprecht F. A. An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. DAGM 2010 
@incollection{andres-2010-opengm,
    author = {Andres, Bjoern 
        and Kappes, Joerg H. 
        and K\"{o}the, Ullrich 
        and Schn\"{o}rr, Christoph 
        and Hamprecht, Fred A.},
    title = {An Empirical Comparison of Inference Algorithms for Graphical 
        Models with Higher Order Factors Using OpenGM},
    year = {2010},
    booktitle = {DAGM},
    doi = {10.1007/978-3-642-15986-2_36},
}
🗎
Andres B., Köthe U., Bonea, A., Nadler, B. and Hamprecht F. A. Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times. DAGM 2009 
@incollection{andres-2009,
    author = {Andres, Bjoern 
        and Koethe, Ullrich 
        and Bonea, Andreea 
        and Nadler, Boaz 
        and Hamprecht, Fred},
    title = {Quantitative Assessment of Image Segmentation Quality by Random 
        Walk Relaxation Times},
    year = {2009},
    booktitle = {DAGM},
    doi = {10.1007/978-3-642-03798-6_51}
}
🗎
Andres B., Köthe U., Helmstaedter M., Denk W. and Hamprecht F. A. Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification. DAGM 2008
DAGM Award 2008 
@inproceedings{andres-2008a,
    author = {Bjoern Andres 
        and Ullrich K\"{o}the 
        and Moritz Helmstaedter 
        and Winfried Denk 
        and Fred A. Hamprecht},
    title = {Segmentation of {SBFSEM} Volume Data of Neural Tissue by Hierarchical 
        Classification},
    year = {2008},
    booktitle = {DAGM},
    doi = {10.1007/978-3-540-69321-5_15},
}
🗎
Andres B., Kondermann C., Kondermann D., Köthe U., Hamprecht F. A. and Garbe, C. S. On Errors-In-Variables Regression with Arbitrary Covariance and its Application to Optical Flow Estimation. CVPR 2008 
@inproceedings{andres-2008b,
    author = {Andres, Bjoern 
        and Kondermann, Claudia 
        and Kondermann, Daniel 
        and K\"othe, Ullrich 
        and Hamprecht, Fred A. 
        and Garbe, Christoph S.},
    title = {On errors-in-variables regression with arbitrary covariance and its 
        application to optical flow estimation},
    year = {2008},
    booktitle = {CVPR},
    doi = {10.1109/CVPR.2008.4587571},
}
🗎
Andres B., Hamprecht F. A. and Garbe C. S. Selection of Local Optical Flow Models by Means of Residual Analysis. DAGM 2007 At publisher's 
@inproceedings{andres-2007,
    author = {Bj\"{o}rn Andres and Fred A. Hamprecht and Christoph S. Garbe},
    title = {Selection of Local Optical Flow Models by Means of Residual 
        Analysis},
    year = {2007},
    booktitle = {DAGM},
    doi = {10.1007/978-3-540-74936-3_8},
}
🗎

Peer-Reviewed Workshop Articles

Stein D. and Andres B. Fine-tuning for Bird Sound Classification: An Empirical Study. Computer Vision For Ecology Workshop at ECCV 2024 (accepted)
Sekuboyina A., Irmai J., Shit S., Kirschke J., Andres B. and Menze B. H. Pushing the limits of an FCN and a CRF towards near-ideal vertebrae labelling. International Symposium on Biomedical Imaging 2023 
@inproceedings{sekuboyina-2023,
    author = {Sekuboyina, Anjany 
        and Irmai, Jannik 
        and Shit, Suprosanna 
        and Kirschke, Jan 
        and Andres, Bjoern 
        and Menze, Bjoern H.},
    booktitle = {International Symposium on Biomedical Imaging (ISBI)}, 
    title = {Pushing the Limits of an {FCN} and a {CRF} Towards Near-Ideal 
        Vertebrae Labelling}, 
    year = {2023},
    doi = {10.1109/ISBI53787.2023.10230520},
}
Rempfler M., Andres B. and Menze B. H. Uncertainty Estimation in Vascular Network Graphs. Workshop on Graphs in Biomedical Image Analysis 2017 
@Inbook{Rempfler2017,
    author = {Rempfler, Markus and Andres, Bjoern and Menze, Bjoern H.},
    editor = {Cardoso, M. Jorge
        and Arbel, Tal
        and Ferrante, Enzo
        and Pennec, Xavier
        and Dalca, Adrian V.
        and Parisot, Sarah
        and Joshi, Sarang
        and Batmanghelich, Nematollah K.
        and Sotiras, Aristeidis
        and Nielsen, Mads
        and Sabuncu, Mert R.
        and Fletcher, Tom
        and Shen, Li
        and Durrleman, Stanley
        and Sommer, Stefan},
    title = {Uncertainty Estimation in Vascular Networks},
    bookTitle = {Graphs in Biomedical Image Analysis, Computational Anatomy and 
        Imaging Genetics: First International Workshop, GRAIL 2017, 6th 
        International Workshop, MFCA 2017, and Third International Workshop, 
        MICGen 2017, Held in Conjunction with MICCAI 2017, Qu{\'e}bec City, QC, 
        Canada, September 10--14, 2017, Proceedings},
    year = {2017},
    publisher = {Springer},
    pages = {42--52},
    doi = {10.1007/978-3-319-67675-3_5},
}
Tang S., Andres B., Andriluka M. and Schiele B. Multi-Person Tracking by Multicut and Deep Matching. 2nd Workshop on Benchmarking Multi-Target Tracking: MOT-Challenge 2016
Winner of the Multi-Object Tracking Challenge at ECCV 2016 
@article{tang-2016,
    author    = {Siyu Tang 
        and Bjoern Andres 
        and Mykhaylo Andriluka 
        and Bernt Schiele},
    title     = {Multi-Person Tracking by Multicut and Deep Matching},
    journal   = {CoRR},
    volume    = {abs/1608.05404},
    year      = {2016},
    url       = {http://arxiv.org/abs/1608.05404},
}
Rempfler M., Schneider M., Ielacqua G., Sprenger T., Xiao X., Stock S. R., Klohs J., Székely G., Andres B., Menze B. H. Rekonstruktion zerebraler Gefäßnetzwerke aus in-vivo μMRA mittels physiologischem Vorwissen zur lokalen Gefäßgeometrie Bildverarbeitung für die Medizin 2015 
@inbook{rempfler-2015-workshop,
    author = {Rempfler, Markus
        and Schneider, Matthias
        and Ielacqua, D. Giovanna
        and Sprenger, Tim
        and Xiao, Xianghui
        and Stock, R. Stuart
        and Klohs, Jan
        and Sz{\'e}kely, G{\'a}bor
        and Andres, Bjoern
        and Menze, H. Bjoern},
    editor = {Handels, Heinz
        and Deserno, Martin Thomas
        and Meinzer, Hans-Peter
        and Tolxdorff, Thomas},
    chapter = "Rekonstruktion zerebraler Gef{\"a}ssnetzwerke aus in-vivo 
        $\mu$MRA mittels physiologischem Vorwissen zur lokalen 
        Gef{\"a}ssgeometrie",
    title = "Bildverarbeitung f{\"u}r die Medizin 2015: Algorithmen - Systeme - 
        Anwendungen. Proceedings des Workshops vom 15. bis 17. M{\"a}rz 2015 in 
        L{\"u}beck",
    year = {2015},
    publisher = {Springer},
    pages = {161--166},
    doi = {10.1007/978-3-662-46224-9_29},
}
Köthe U., Andres B., Kröger T. and Hamprecht F. A. Geometric Analysis of 3D Electron Microscopy Data. DGCI Workshop on Applications of Discrete Geometry and Mathematical Morphology 2010 
@incollection{koethe-2012,
    author = {Koethe, Ullrich 
        and Andres, Bjoern 
        and Kroeger, Thorben 
        and Hamprecht, Fred A.},
    title = {Geometric Analysis of {3D} Electron Microscopy Data},
    booktitle = {Applications of Discrete Geometry and Mathematical Morphology},
    series = {Lecture Notes in Computer Science (LNCS)},
    editor = {Koethe, Ullrich and Montanvert, Annick and Soille, Pierre},
    publisher = {Springer},
    year = {2012},
    pages = {93--108},
    volume = {7346},
    doi = {10.1007/978-3-642-32313-3_7},
}

Book Chapters

Garbe C. S., Krajsek K., Pavlov P., Andres B., Mühlich M., Stuke I., Mota C., Böhme M., Haker M., Schuchert T., Scharr H., Aach T., Barth E., Mester R. and Jähne B. Nonlinear Analysis of Multi-dimensional Signals. In Dahlhaus R., Kurths J., Maass P. and Timmer J., eds., Mathematical Methods in Signal Processing and Digital Image Analysis, pages 231-288. Springer, 2008 
@incollection{andres-2007-nonlinear,
    editor = {Dahlhaus, Rainer 
        and Kurths, J\"urgen 
        and Maass, Peter 
        and Timmer, Jens},
    booktitle = {Mathematical Methods in Signal Processing and Digital Image 
        Analysis},
    year = {2008},
    publisher = {Springer},
    author = {Garbe, Christoph S. 
        and Krajsek, Kai 
        and Pavlov, Pavel 
        and Andres, Bj\"orn 
        and M\"uhlich, Matthias 
        and Stuke, Ingo 
        and Mota, Cicero 
        and B\"ohme, Martin 
        and Haker, Martin 
        and Schuchert, Tobias 
        and Scharr, Hanno 
        and Aach, Til 
        and Barth, Erhardt 
        and Mester, Rudolf 
        and J\"ahne, Bernd},
    title = {Nonlinear Analysis of Multi-Dimensional Signals},
    pages = {231--288},
    series = {Understanding Complex Systems},
    doi = {10.1007/978-3-540-75632-3_7},
}

Conference Proceedings as Editor

Andres B., Bernard F., Cremers D., Frintrop S., Goldlücke B., and Ihrke I., Eds. Pattern Recognition, Proceedings of the 44th German Conference. vol. 13485, LNCS, Berlin, Germany: Springer, 2022. 
@proceedings{andres-2022-gcpr-proceedings,
    editor = {Bjoern Andres and Florian Bernard and Daniel Cremers and Simone Frintrop and Bastian Goldl\"ucke and Ivo Ihrke},
    title = {Pattern Recognition, Proceedings of the 44th German Conference},
    year = {2022},
    volume = {13485},
    series = {Lecture Notes in Computer Science},
    publisher = {Springer},
}
Andres B., Campen M. and Sedlmair M., Eds. 26th International Symposium on Vision, Modeling, and Visualization (VMV). Eurographics Association 2021 
@proceedings{andres-2021-vmv,
    editor    = {Bjoern Andres and Marcel Campen and Michael Sedlmair},
    title     = {26th International Symposium on Vision, Modeling, and 
               Visualization, {VMV} 2021, Virtual Event / Technische 
               Universit{\"{a}}t Dresden, Germany, September 27-28, 2021},
    publisher = {Eurographics Association},
    year      = {2021},
    url       = {https://diglib.eg.org/handle/10.2312/2633087},
}
Rosenhahn B. and Andres B., Eds. Pattern Recognition, Proceedings of the 38th German Conference. vol. 9796, LNCS, Berlin, Germany: Springer, 2016. 
@proceedings{andres-2016-gcpr-proceedings,
    editor = {Bodo Rosenhahn and Bjoern Andres},
    title = {Pattern Recognition, Proceedings of the 38th German Conference},
    year = {2016},
    volume = {9796},
    series = {Lecture Notes in Computer Science},
    publisher = {Springer},
}

Technical Reports

Irmai J., Naumann L. F. and Andres B. Chorded Cycle Facets of Clique Partitioning Polytopes. arXiv 2024 
@misc{swoboda-2024-structured,
    author = {Jannik Irmai and Lucas Fabian Naumann and Bjoern Andres},
    title = {Chorded Cycle Facets of Clique Partitioning Polytopes},
    year = {2024},
    eprint = {2411.03407},
    archivePrefix = {arXiv},
    url = {https://www.arxiv.org/abs/2411.03407},
}
🗎
Swoboda P., Andres B., Hornakova A., Bernard F., Irmai J., Roetzer P., Savchynskyy B., Stein D., Abbas A. Structured Prediction Problem Archive. arXiv 2024 
@misc{swoboda-2024-structured,
    author = {Paul Swoboda 
        and Bjoern Andres 
        and Andrea Hornakova 
        and Florian Bernard 
        and Jannik Irmai 
        and Paul Roetzer 
        and Bogdan Savchynskyy 
        and David Stein 
        and Ahmed Abbas},
    title = {Structured Prediction Problem Archive},
    year = {2024},
    eprint = {2202.03574},
    archivePrefix = {arXiv},
    url = {https://arxiv.org/abs/2202.03574},
}
🗎
Stein D. and Andres B. Inapproximability of a Pair of Forms Defining a Partial Boolean Function. arXiv 2022 
@misc{stein-2021,
    author = {David Stein and Bjoern Andres},
    title = {Inapproximability of a Pair of Forms Defining a Partial Boolean 
        Function},
    year = {2022},
    eprint = {2102.04703},
    archivePrefix = {arXiv},
    url = {http://arxiv.org/abs/2102.04703},
}
🗎
Andres B., Beier T. and Kappes J. H. OpenGM: A C++ Library for Discrete Graphical Models. arXiv 2012 
@misc{andres-2012-arxiv,
    author = {Bj{\"{o}}rn Andres and Thorsten Beier and J{\"{o}}rg H. Kappes},
    title = {{OpenGM: A C++} Library for Discrete Graphical Models},
    eprint = {1206.0111},
    archivePrefix = {arXiv},
    year = {2012},
    url = {http://arxiv.org/abs/1206.0111},
}
🗎 01
Andres B., Köthe U., Kroeger T. and Hamprecht F. A. Runtime-Flexible Multi-dimensional Arrays and Views for C++98 and C++0x. arXiv 2010 
@misc{andres-2009-arxiv,
    author = {Bj{\"{o}}rn Andres 
        and Ullrich K{\"{o}}the 
        and Thorben Kr{\"{o}}ger 
        and Fred A. Hamprecht},
    title = {Runtime-Flexible Multi-dimensional Arrays and Views for {C++98} and {C++0x}},
    eprint = {1008.2909},
    archivePrefix = {arXiv},
    year = {2010},
    url = {http://arxiv.org/abs/1008.2909},
}
🗎 01

*) Authors contributed equally.

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